Showing posts with label coral transect. Show all posts
Showing posts with label coral transect. Show all posts

Thursday, June 19, 2014

Belize: Working the transects

Aquarium coral biologist Randi Rotjan, PhD, is in Belize studying changes in the reefs off Carrie Bow Cay along with diver Sarah Taylor and aquarist Pete Gawne, both also from the Aquarium. Over the next couple weeks, they'll be posting stories from the tropics, including lots of pictures from this familiar spot. Learn about previous expeditions in 201320122011 and 2010.

Today's post comes from Sarah.

Since I had to learn how the data for this particular research was being gathered, I thought I’d share the methods with our readers. First thing in the morning, we load up our dive gear in one of the Smithsonian’s boats:


And when I say first thing I mean after breakfast. It takes a lot of energy to lug all this stuff around – both above and under water – so we needed the energy. Basically we follow a pattern of eat, dive, eat, dive, repeat - which isn’t too difficult because the cook on the island, Martha, is amazing.

Here’s one of the picnic tables for meals

So after getting everything we need on one of the boats, we motor out to our dive site to find a particular transect. At the start of this project, 24 transects were laid in two different areas: 12 in a newly protected area (behind Carrie Bow Cay) and 12 in an area without protection (called South Reef). The GPS coordinates for each transect had been previously recorded. Even still, a few times the transects were a little difficult to find and it felt like we were searching for a needle in a haystack.

But we found them all! And after locating the one we were looking, we’d get right to work. One diver (the “fish person”) would run a measuring tape from the transect’s start to the transect’s end which was 30 meters away. Then the “coral person” would start identifying and measuring corals. The “fish person” would do the same for fish.

As a “coral person” I had to force myself to ignore all the fish. A few times I caught myself thinking, “Oh look at all that huge school of creole wrasses” or “that’s a whitespotted toadfish!*” and then “No time for these guys! Focus!” And go back to work.

A floating buoy marks the start of the transect line

And by work I mean: Measure one meter off the transect so you’re looking at a square meter, correctly identify each and every coral species in that space, count each coral, measure each one’s size, and record the data. Then move one meter down and repeat. Do this 29 more times per transect. Then do the whole thing again for the next transect, etcetera, etcetera…


One of the coral measuring sticks: a piece of PVC marked off in different size increments

And by work, again, I mean: I’m underwater counting corals. This is super fun. And totally awesome. Am I really getting paid to do this?

— Sarah

*Note: As I said, I had to ignore the fish while diving but I really did see a whitespotted toadfish! It was exciting because they are endemic to Belize and are rarely seen. Fortunately, the toadfish was hiding underneath an overhang that was encrusted with corals so I couldn’t really miss is. Unfortunately, I didn’t have my camera with me. But that's where the internet comes in!

Whitespotted toadfish | Photo: Ryan Photographic via

Thursday, May 5, 2011

Belize Expedition: Hello from Walter!

Belize Expedition, 2011

From Walter:
I can’t tell you how tired I am--and this was my first day! These scientists work very, very hard.

A ramora in the crystal clear waters of Belize (Photo: W. Flaherty)

Following three dives in crystal clear blue water and majestic corals, we’re now working late into the evening on a hermit crab experiment to determine whether or not smaller ones recruit others to exchange shells more suitable for their size. Believe it or not, I now know how to identify the type of hermit crab shell--size them, count their legs and assess the damage of their shell. Wow!

Underwater today I helped Randi, Pete, Jay and two scientists from the Smithsonian lay out three 25 meter transects so that area surveys of coral density and animal life could be taken. Scientists will return in several months to determine whether or not improvements in the marine protected area have occurred.

(Photo: W. Flaherty)

It’s getting late and these guys are still working. I’m going to bed! 

-Walter

Tuesday, March 22, 2011

Fiji Expedition: Discovering Solevu Reefs

This is a guest post from Dr. Stacy Jupiter, Program Director for the Wildlife Conservation Society in Fiji. The photos are by frequent Global Explorers Blog contributor Keith Ellenbogen.

I had come to the chiefly village in Solevu District with Waisea from our team and the mata ni tikina (representative to the Provincial Council) from Nasavu Village, where we are staying in Nadi District, in order to present our sevusevu. [You can read a description of one of these welcoming ceremonies in this post from the 2011 Joint Aquarium Fiji Expedition.] When visiting a village in Fiji, it is traditional protocol to ask permission of the local chiefs before undertaking any marine survey in their waters. In Solevu village, their chief is a woman and she was particularly interested in how we could help her people restore their vanishing fisheries.


Preparing for a marine survey (Photo: Keith Ellenbogen)

Although illegal under the Fiji Fisheries Act, I learned that the women from Solevu village have been regularly using fish poison from derris root to obtain their catch. Lately, many women have come home empty handed.

"We're feeding our children [instant] noodles," the man next to me confided. "This is not healthy."

Dr. Stacy Jupiter preparing to survey reefs (Photo: Keith Ellenbogen)

As numerous bowls of kava were circulated, I listened as person after person recounted what they had heard about the positive benefits of management in Kubulau District, where the Wildlife Conservation Society (WCS) has been working with communities since 2005. One man whose wife is from Kubulau was amazed on his last trip there when he snorkeled inside one of the marine protected areas. The Solevu communities were ready for help and they wanted us to start immediately.

Survey underway (Photo: Keith Ellenbogen)

Fortunately, that's why we are here. We are doing initial surveys of all of the reef habitats of Solevu District in order to make recommendations of where might be the best places to establish new protected areas. We will present all of the results back to the villages later this year. Then the chiefs will weigh the science against the costs of closing off areas to fishing to ultimately decide the size and location of the fisheries closures.

Coral transect (Photo: Keith Ellenbogen)

(Photo: Keith Ellenbogen)

So far, there have been pleasant surprises, but also some worrying signs. The pleasant surprises have included a manta, a shovel nose ray, grey reef sharks, humphead wrasse and turtles--all rare, charismatic species which might draw dive tourism to the area.

(Photo: Keith Ellenbogen)

The worrying signs on first impression are that the quantity and size of food fish are very low. However, there is opportunity to restore the fish populations. The corals are thriving across complex reef structure, which means that if the fish are given the chance, they will come back to feed future generations of Solevu children and bring them back to health.

-Stacy Jupiter, PhD

Friday, February 4, 2011

Panama Expedition: A research focus in Bocas...

Hola! While I'm here teaching this class, I have the privilege of sharing the STRI marine station with some Boston colleagues, who are also escaping the snow for the sake of research. It's a tough job, but someone's got to do it. :-)

In this case, that someone is Liz Hemond, who is a Ph.D. student at Northeastern University in Dr. Steve Vollmer's laboratory. Liz did her undergraduate work at Columbia University and a masters degree at UNC Wilmington on bay scallop population genetics. She is now continuing her East Coast tour ranging from Boston to Panama, and I'm delighted to have her guest blog today.

Liz Hemond, bravely capturing an invasive lionfish in Panama.

So without further ado, here she is!

Enjoy,

Randi
_________

I am lucky enough to have escaped from the brutal Boston winter (sorry fellow NEU grad students!) to the tropical paradise of Bocas del Toro, Panama, where we are based out of the Smithsonian Tropical Research Institute field station. While I assist with the coral biology and coral reef ecology courses offered by the Northeastern University Three Seas program, I also have the opportunity to start some of my own research, follow up on studies that my lab has been conducting for the past three years, and explore some new places around the archipelago.

Smithsonian Tropical Research Institute, Bocas del Toro, Panama. Photo: Liz Hemond

I am a PhD student in the lab of Steve Vollmer, and our group’s research focuses on the study system of white band disease in corals. The corals affected by this disease are the Caribbean Acroporid corals, staghorn coral (Acropora cervicornis) and elkhorn coral (A. palmata). These are major reef building corals throughout the Caribbean, but their populations have declined massively due to white band disease.

Fortunately for our research, Bocas del Toro has impressive fields of beautiful staghorn corals, which manage to persist, despite the disease. Part of our research consists of simply monitoring the prevalence of the disease on staghorn corals, which appears to increase during the summer and decrease in the winter (aka the slightly less hot months). We also measure the rates at which the disease affects the colonies. The disease can kill a year’s worth of coral growth in 2 to 3 days. Beyond monitoring, our lab is trying to understand both what causes the disease and the response of the coral itself to the disease.

White band disease monitoring, Liz Hemond and David Combosch. Photos: Chris Marks

Like many relationships, the relationship between corals and disease pathogens is complicated… Particularly complicated, however, because the coral animal contains photosynthesizing endosymbionts called symbiodinium (or zooxanthellae) and is also covered in a community of bacteria that may be either beneficial, or harmful, or neither.

In the past few years, we have learned that some corals can resist white band disease, which could help these species survive to replenish populations that were previously decimated by the disease. The coral animal does have an immune system to combat the undesirable microbes, but how this works, and why some corals can fight off white band disease and others can’t is what our lab is investigating.

White band disease on Acropora cervicornis. Photo: Liz Hemond

I am an odd one in the lab, however, so aside from helping with the monitoring, my focus is not on white band disease. My research is trying to understand the genetic basis for how staghorn corals grow. Corals are very primitive animals, and most reef-building corals form colonies made up of asexually produced polyps. Acroporids are unique in that the polyps within their colonies have different functions, those at the tip of the branches (called apical polyps) are the site of rapid growth and calcification, while those farther down the branches (called radial polyps) contain the majority of the endosymbionts and are also the site of gamete production.

Acropora cervicornis under the dissecting scope. Photo: Liz Hemond

The three seas students have been helping me set up an experiment to look at how these different regions of the colony function.

Collecting fragments for a growth experiment with Three Seas student Felicia Aronson. Photo: Chris Marks.

With my focus on staghorn corals, most of my time is spent at the same reef sites with my head in a patch of corals, but being on a coral reef, there is always so much more to see. Having a course with a group of almost 20 marine biology students is a great opportunity to check out new sites, different corals and learn more about the reefs in Bocas del Toro.

The different reefs here, whether exposed or protected, close to or far from the extensive mangroves, have strikingly different communities and illustrate how different corals have very different habitat requirements. For example, to study our staghorn coral, the best sites are a 30 minute boat ride from the Smithsonian station. But if you study boulder corals such as Montastrea, lettuce corals, the Agaricias, or finger corals (Porites furcata) there are great sites just a five or ten minute ride away. This has to do with the water flow through and around the islands of Bocas del Toro, as well as the influence of the mangroves, Changuinola River and Canal, and human development, which all affect the quality of the water on the reefs.

Map of Bocas del Toro. Source: bocaspanama.com

This past summer was unusually warm, and the reefs in Bocas were hit hard by a coral bleaching event. This January when we first arrived, I was surprised to see how much of the corals had bleached and remained bleached this many months afterward, particularly at the reefs between Isla Colon and the mainland. Besides the warm water in the late summer, the corals also suffered mortality due to a severely hypoxic layer that formed in the bay below 10 meters, which killed or bleached a lot of corals in the deeper water.

The health of the reefs in Bocas could also be heavily influenced by the large-scale agriculture, particularly the banana plantations that characterize the landscape of nearby Changuinola. We had the opportunity to take a boat ride up the Changuinola canal to see one of these plantations for ourselves.
Trip to Changuinola with the Three Seas students. Photos: Liz Hemond

Given the scale of the plantations, and the prevalent pesticide and fertilizer use, it’s hard to imagine there they do not a large impact on the coral ecosystems here. However, we noticed a lot of cool critters manage to make their home in amongst the banana trees just fine.
Banana plantation in Changuinola, Panama. Photos: Liz Hemond

With so many places to explore in and out of the water in Bocas, I’m sure we will have no trouble filling our last five weeks here.
Stay warm everyone!
Liz

Sunday, January 30, 2011

Panama Expedition: Pencils.... Down!

Taking a test is not typically a fun experience. Stress. Anxiety. GRADES.

But in any class experience, test-taking is a necessary assessment of knowledge and here in Bocas del Toro, we have a different approach. A FUN approach! We feel that the best way to test fish knowledge is... to go where the fish are. Have you ever taken an underwater exam before?


For us, the easiest way to learn our fish identification is to take our pencils... down! Equipped with clean dive slates, a pencil, and all of their fishy knowledge amassed to-date, the Three Seas students snorkeled a transect with a fish placed every 2 m along the line. Asked to identify family, genus, and species, students went face-to-face with each question. They also had to answer questions about life stage, feeding mode, sleeping habitat, propulsion, anatomy, etc.

I'm happy to report that the class did extremely well. You might even give them a star for their efforts; in this case, an Oreaster! :-)


So, your turn. Can you identify the following two species? For a bonus point, what do they eat?

Fish photos by Christopher Marks

Happy studying,

Randi

Monday, March 9, 2009

#10: The Closing Hours of the Expedition

Post by Steve Bailey

6:15AM- Another amazing sunrise. Wow.


Photo: Keith Ellenbogen

Within the hour, it'll be back into those wet and very ripe (quite amazing how funky neoprene becomes after 9 days and about 3 dozen dives) 3mm wetsuits to start our last day of dives. -sigh- All of us Aquarium Folks are trying hard not to think about work-esque things, and dwelling as long as possible on things Fijian, aquatic and soaking in every bit of this 82dF H2O and sweet smelling air. Nothing, absolutely nothing smells like the tropics.

A Nai'a crew member mentioned to one of our gang last night that when we are onboard it isn't like working for them. Geez. When I heard that I got all misty-eyed. Seriously. I'm comfortable enough with my manliness to admit that I love these guys. The high grades for these bi-coastal aquarium voyages in Fijian waters is 50% what we see and do, and 50% the incredibly genuine staff that makes this boat so unique. It's an honor that they feel that way about us.


group photo: Keith Ellenbogen

The day's first dive is Mt. Mutiny, a seamount rising up from 3000' to within 5' of the surface, no larger at the crest than a football field, and named with the ubiquitous Captain William Bligh in mind. Bligh managed to chart this seamount while heading to East Timor in his launch overfilled with loyal crew (very short on food and water), being chased by Fijian war canoes, with nearly 2000 miles under his keel after Fletcher Christian set him adrift, and another 2000 to go. Amazing. Talk about a multi-tasker.

'To-dos' for this dive include getting a new coral 20 meter transect mapped out near the reef crest to replace the multi-year study abandoned (due to persistently strong currents) on the Go Mo site. Dr. Webster, Keith Ellenbogen, and I will drape the marked surveyor's tape over the coral starting at 7' and ending at 55', in preparation for videotaping on the next dive. The pitch of this transect will be nearly 60 degrees! After all, this bathymetric feature falls quickly away to 3000,' and the length of our study is determined by the cliff. Beyond that edge, it'll be nothingness, only the indigo color of deep water and something resembling acrophobia (fear of heights- is that possible in water?!) for anyone hovering at the tape's end.


Photo: Mark Rosenstein

The rest of the gang is headed to 110' where silvertip sharks (Carcharinus albamarinatus) have on occasion been seen. Not a high probability exercise, but all feel it is worth using up valuable bottom time to head down there. It's a classic wall dive, and those not doing the day's more mundane science are really itching to get into the skiffs, therefore skipping 1st Breakfast.

1PM- Another terrific lunch; which is both a good thing, and a bad thing. Getting back to Boston means the start of caloric austerity for weeks to come.

The morning's dives hit on all cylinders. The 'deep-crew' saw 2 silvertips at 107' and Mark Rosenstein managed to snap a decent photo even though he had his macro lens on his camera for taking pictures of tiny critters. I'm very envious of them all.



Photo: Keith Ellenbogen

We succeeded on the transect as well (photo above). Both John Larkin and Keith swam four legs up and down that line slowly videotaping the abundant coral growth. It made my ears hurt just watching them. At this point of the expedition, my middle ears have required serious molly-coddling after every dive to keep me eligible for the next one.


Photo: Keith Ellenbogen

The transect footage will be analyzed once we get back to the States for percent cover of coral and the number of species. This same exercise will be done each time we revisit Mt Mutiny because repeatedly filming and analyzing this pristine stretch of coral will clue us into environmental change. Here's to hoping Doc Webster sees no change when he visits later this year!


Photo: Keith Ellenbogen

9PM- The gang just finished an expertly prepared meal of wahoo (freshly caught at 5 PM off the Nai'a 's stern) and rice by Chefs Penni and Ben. Immediately on its heels were Graham Connor's 71st Birthday Celebration (replete with a Fijian version of Happy Birthday sung expertly by the Crew), our last 'Diver of the Day Awards,' and the traditional end-of-expedition slide show. Everyone was pretty shaken up by the combination of our time here ending tomorrow, and the powerful images that we all captured during our expedition.

The days spent on this boat pass by at lightning speed. It's unfathomable that tomorrow we'll be listening to 'Mo and the UndeNai'ables' sing Isalei, the traditional Fijan farewell song. There won't be a dry eye amongst us.

-Bailey